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MySQL Optimisation Required

Published by: rose 2009-01-07

  • It appears MySQL is causing my servers CPU usage to shoot up to 100% a couple of times per day, and for no apparent reason (also, I've noticed this happening. This results in my site being inaccessible until I restart MySQL (I'm having to restart everytime this is happening). Occassionally, I do manage to access the site during these periods only to be given a "Database Error" page generated from vBulletin.

    This problem has only recently started happening, and although there has been a small increase in site usage, I'm only still averaging around 6 members online and 60 guests/spiders (over a 15 minute period). The server load averages around 0.5 throughout the day and memory usage 50%.

    I'd appreciate it if somebody could suggest some optimised configurations for my server (specifically mysql), of which I've listed the specs below.

    Thanks!

    Server specs:

    Dedicated...
    P4 2.8Ghz, 1GB RAM
    250GB SATA, non raid
    CentOS 4.3
    Apache/1.3.37
    MySQL 4.1.21 (ISAM)

    vB Version: 3.6.4

    MySQL config:

    [mysqld]
    set-variable = max_connections=500
    safe-show-database
    query_cache_type=2
    query_cache_limit=1M
    query_cache_size=32M

    Apache config:

    KeepAlive On (Apache is running fine so at the moment I've chosen to leave KeepAlive On)
    Timeout 300
    MaxKeepAliveRequests 100
    KeepAliveTimeout 15
    MinSpareServers 5
    MaxSpareServers 10
    StartServers 5
    MaxClients 150
    Maxrequestsperchild 0


  • Try the following in this exact order. You can ignore any of the suggestions that you have already done.

    1. Upgrade MySQL server to 4.1.22
    2. Upgrade PHP to 4.4.4 and/or recompile PHP 4.4.4 after upgrading MySQL
    3. Edit /etc/my.cnf and place the following mysql server settings in /etc/my.cnf and restart mysql server afterwards


    [mysqld]
    safe-show-database
    #old_passwords
    back_log = 100
    skip-innodb
    max_connections = 500
    key_buffer = 16M
    myisam_sort_buffer_size = 64M
    join_buffer_size = 1M
    read_buffer_size = 1M
    sort_buffer_size = 2M
    table_cache = 1800
    thread_cache_size = 256
    wait_timeout = 45
    connect_timeout = 10
    15 tips on optimising MySQL databases and MySQL queries - esn studio::
    May 18, 2007 I have been reading articles on how to optimise MySQL databases and queries and Name (required). Mail (will not be published) (required)
    http://eisabainyo.net/weblog/2007/05/18/15-tips-on-optimising-mysql-databases-and-mysql-queries/
    HOME
    MySQL Optimization Tips « Database Articles::
    Mar 24, 2008 MYSQL Optimization Tips The MySQL database server performance depends Avoid the use of cursors in the stored procedure if not required.
    http://sqldbpool.wordpress.com/2008/03/24/mysql-optimization-tips/
    HOME
    tmp_table_size = 128M
    max_heap_table_size = 64M
    max_allowed_packet = 64M
    max_connect_errors = 10
    read_rnd_buffer_size = 524288
    bulk_insert_buffer_size = 16M
    query_cache_limit = 2M
    query_cache_size = 16M
    query_cache_type = 1
    query_prealloc_size = 163840
    query_alloc_block_size = 32768
    default-storage-engine = MyISAM

    [mysqld_safe]
    open_files_limit = 8192

    [mysqldump]
    quick
    max_allowed_packet = 16M

    [myisamchk]
    key_buffer = 384M
    sort_buffer = 384M
    read_buffer = 256M
    write_buffer = 256M

    [mysqlhotcopy]
    interactive-timeout


    4. Install Xcache which seems to be a bit faster than APC Cache - http://www.vbulletin.com/forum/showthread.php?t=213267

    5. Upgrade to vB 3.0.17 http://www.vbulletin.com/forum/showthread.php?t=209720 if you're on vB 3.0.xx or upgrade to vB 3.5.7 http://www.vbulletin.com/forum/showthread.php?t=209719 if you're on vB 3.5.x. Upgrade to vB 3.6.4 http://www.vbulletin.com/forum/showthread.php?t=209717 if you're on vB 3.6.x

    6. If you just upgraded to vB 3.5.x/3.6.x try to disable these 4 options:

    Admin CP -> vBulletin Options -> Forums Home Page Options -> Display Logged in Users?

    Admin CP -> vBulletin Options -> Forum Display Options (forumdisplay) -> Show Users Browsing Forums

    Admin CP -> vBulletin Options -> Thread Display Options -> Show Users Browsing Thread

    Admin CP -> vBulletin Options -> Message Searching Options -> Automatic Similar Thread search

    7. Edit httpd.conf values to the below ones and restart apache
    MySQL Optimization Hack - How to Increase Load without Failing ::
    Dec 10, 2008 MySQL Optimization Hack - How to Increase Load without Failing your MySQL Name (required). Mail (will not be published) (required)
    http://zedomax.com/blog/2008/12/10/mysql-optimization-hack-how-to-increase-load-without-failing-your-mysql-server/
    HOME
    High Performance MySQL: Optimization, Backups, Replication, and ::
    Download Free eBook:High Performance MySQL: Optimization, Backups, Replication, required. Email: required, hidden. Mail To: need login. Comments:
    http://www.ebookee.com/High-Performance-MySQL-Optimization-Backups-Replication-and-More_191927.html
    HOME

    KeepAlive: on
    MaxKeepAliveRequests: 100
    KeepAliveTimeout: 5
    MinSpareServers: 15
    MaxSpareServers: 20
    StartServers: 15
    MaxClients: 150
    #MaxRequestsPerChild: 500


  • The spike has just occurred again so I've captured the top data... I'd really appreciate some help.

    TOP (taken from last CPU spike)


    top - 00:13:42 up 2 days, 1 min, 1 user, load average: 1.48, 1.27, 0.80
    Tasks: 191 total, 1 running, 190 sleeping, 0 stopped, 0 zombie
    Cpu(s): 90.4% us, 9.6% sy, 0.0% ni, 0.0% id, 0.0% wa, 0.0% hi, 0.0% si
    Mem: 1034668k total, 1018040k used, 16628k free, 21852k buffers
    Swap: 2048276k total, 9036k used, 2039240k free, 92884k cached
    Unknown command - try 'h' for help
    PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
    3878 mysql 15 0 165m 30m 2372 S 91.3 3.0 58:51.14 mysqld
    18070 nobody 15 0 24992 14m 3136 S 0.3 1.4 0:04.22 httpd
    29475 nobody 15 0 19080 8244 3036 S 0.3 0.8 0:00.14 httpd
    32038 root 16 0 3160 1032 760 R 0.3 0.1 0:00.02 top
    1 root 15 0 2204 552 472 S 0.0 0.1 0:00.96 init
    2 root 34 19 0 0 0 S 0.0 0.0 0:00.15 ksoftirqd/0
    3 root 5 -10 0 0 0 S 0.0 0.0 0:00.08 events/0
    4 root 10 -10 0 0 0 S 0.0 0.0 0:00.00 khelper
    5 root 15 -10 0 0 0 S 0.0 0.0 0:00.00 kacpid
    20 root 5 -10 0 0 0 S 0.0 0.0 0:00.00 kblockd/0
    39 root 16 0 0 0 0 S 0.0 0.0 0:00.56 pdflush
    41 root 10 -10 0 0 0 S 0.0 0.0 0:00.00 aio/0
    21 root 15 0 0 0 0 S 0.0 0.0 0:00.00 khubd
    40 root 15 0 0 0 0 S 0.0 0.0 0:03.74 kswapd0
    187 root 25 0 0 0 0 S 0.0 0.0 0:00.00 kseriod
    288 root 5 -10 0 0 0 S 0.0 0.0 0:00.00 ata/0
    290 root 23 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh_0
    291 root 24 0 0 0 0 S 0.0 0.0 0:00.00 scsi_eh_1
    305 root 15 0 0 0 0 S 0.0 0.0 0:14.11 kjournald
    1479 root 6 -10 1808 460 380 S 0.0 0.0 0:00.01 udevd
    1675 root 6 -10 0 0 0 S 0.0 0.0 0:00.00 kauditd
    1716 root 6 -10 0 0 0 S 0.0 0.0 0:00.00 kmirrord
    1741 root 19 0 0 0 0 S 0.0 0.0 0:00.00 kjournald
    1742 root 15 0 0 0 0 S 0.0 0.0 0:00.35 kjournald
    2411 root 16 0 3132 548 456 S 0.0 0.1 0:00.95 syslogd
    2415 root 16 0 2412 384 316 S 0.0 0.0 0:00.05 klogd
    2436 named 18 0 38040 3072 1692 S 0.0 0.3 0:19.88 named
    2498 root 15 0 3196 292 232 S 0.0 0.0 0:00.00 courierlogger
    2499 root 16 0 3076 592 488 S 0.0 0.1 0:00.00 authdaemond
    2525 root 16 0 3076 364 248 S 0.0 0.0 0:00.04 authdaemond
    2526 root 16 0 3076 364 248 S 0.0 0.0 0:00.04 authdaemond
    2527 root 16 0 3076 364 248 S 0.0 0.0 0:00.03 authdaemond
    2528 root 16 0 3076 364 248 S 0.0 0.0 0:00.05 authdaemond
    2529 root 16 0 3076 364 248 S 0.0 0.0 0:00.05 authdaemond
    2530 root 16 0 5356 268 168 S 0.0 0.0 0:00.03 rpc.idmapd
    2604 root 19 0 1784 440 368 S 0.0 0.0 0:00.00 acpid
    2613 root 16 0 8360 1720 1324 S 0.0 0.2 0:00.01 cupsd
    2700 root 18 0 4312 1228 1044 S 0.0 0.1 0:00.00 bash
    2762 root 16 0 5028 936 744 S 0.0 0.1 0:00.00 sshd
    2775 root 18 0 2812 628 544 S 0.0 0.1 0:00.00 xinetd
    2793 root 15 0 13304 7772 1084 S 0.0 0.8 0:00.99 chkservd
    2804 root 18 0 1684 212 160 S 0.0 0.0 0:00.00 courierlogger
    2805 root 18 0 2328 480 408 S 0.0 0.0 0:00.00 couriertcpd
    2812 root 23 0 1764 212 160 S 0.0 0.0 0:00.00 courierlogger
    2813 root 24 0 1808 480 408 S 0.0 0.0 0:00.00 couriertcpd
    2820 root 16 0 3404 292 232 S 0.0 0.0 0:00.33 courierlogger
    2821 root 16 0 1736 496 428 S 0.0 0.0 0:00.34 couriertcpd
    2826 root 22 0 2180 212 160 S 0.0 0.0 0:00.00 courierlogger
    2827 root 23 0 3216 480 408 S 0.0 0.0 0:00.00 couriertcpd
    3216 mailnull 16 0 8448 876 580 S 0.0 0.1 0:00.45 exim
    3220 mailnull 19 0 7632 836 544 S 0.0 0.1 0:00.00 exim
    3226 root 16 0 4008 1116 640 S 0.0 0.1 0:00.48 antirelayd
    3463 root 16 0 26216 22m 1972 S 0.0 2.3 0:01.74 spamd

    MySQL Stats

    Can't seem to capture more info than this, the length of output is too long...

    max_join_size 4294967295
    max_length_for_sort_data 1024
    max_prepared_stmt_count 16382
    max_relay_log_size 0
    max_seeks_for_key 4294967295
    max_sort_length 1024
    max_tmp_tables 32
    max_user_connections 0
    max_write_lock_count 4294967295
    myisam_data_pointer_size 4
    myisam_max_extra_sort_file_size 2147483648
    myisam_max_sort_file_size 2147483647
    myisam_recover_options OFF
    myisam_repair_threads 1
    myisam_sort_buffer_size 8388608
    myisam_stats_method nulls_unequal
    High Performance MySQL | O'Reilly Media::
    In High Performance MySQL you will learn about MySQL indexing and optimization in depth so you can make better use of these key features.
    http://oreilly.com/catalog/9780596003067/
    HOME
    Re: bulk insert optimization required: msg#00004 db.mysql.c++::
    Re: bulk insert optimizat - Find Help in our db.mysql.c++ Forum.
    http://osdir.com/ml/db.mysql.c++/2007-04/msg00004.html
    HOME
    net_buffer_length 16384
    net_read_timeout 30
    net_retry_count 10
    net_write_timeout 60
    new OFF
    old_passwords OFF
    open_files_limit 2510
    pid_file /var/lib/mysql/server.mydomain.com.pid
    port 3306
    preload_buffer_size 32768
    prepared_stmt_count 0
    protocol_version 10
    query_alloc_block_size 8192
    query_cache_limit 1048576
    query_cache_min_res_unit 4096
    query_cache_size 33554432
    query_cache_type DEMAND
    query_cache_wlock_invalidate OFF
    query_prealloc_size 8192
    range_alloc_block_size 2048
    read_buffer_size 131072
    read_only OFF
    read_rnd_buffer_size 262144
    relay_log_purge ON
    relay_log_space_limit 0
    rpl_recovery_rank 0
    secure_auth OFF
    server_id 0
    skip_external_locking ON
    skip_networking OFF
    skip_show_database OFF
    slave_net_timeout 3600
    slave_transaction_retries 0
    slow_launch_time 2
    socket /var/lib/mysql/mysql.sock
    sort_buffer_size 2097144
    sql_mode
    sql_notes ON
    sql_warnings ON
    storage_engine MyISAM
    sync_binlog 0
    sync_frm ON
    sync_replication 0
    sync_replication_slave_id 0
    sync_replication_timeout 0
    system_time_zone GMT
    table_cache 64
    table_type MyISAM
    thread_cache_size 0
    thread_stack 196608
    time_format %H:%i:%s
    time_zone SYSTEM
    tmp_table_size 33554432
    tmpdir
    transaction_alloc_block_size 8192
    transaction_prealloc_size 4096
    tx_isolation REPEATABLE-READ
    version 4.1.21-standard-log
    version_comment MySQL Community Edition - Standard (GPL)
    version_compile_machine i686
    version_compile_os pc-linux-gnu
    wait_timeout 28800
    +---------------------------------+----------------------------------------------+
    +----------------------------+-----------+
    Variable_name Value
    +----------------------------+-----------+
    Aborted_clients 0
    Aborted_connects 6
    Binlog_cache_disk_use 0
    Binlog_cache_use 0
    Bytes_received 98619139
    Bytes_sent 167730990
    Com_admin_commands 1
    Com_alter_db 0
    Com_alter_table 0
    Com_analyze 0
    Com_backup_table 0
    Com_begin 0
    Com_change_db 173805
    Com_change_master 0
    Com_check 0
    Com_checksum 0
    Com_commit 0
    Com_create_db 0
    Com_create_function 0
    Com_create_index 0
    Com_create_table 0
    Com_dealloc_sql 0
    Com_delete 2116
    Com_delete_multi 0
    Com_do 0
    Com_drop_db 0
    Com_drop_function 0
    Com_drop_index 0
    Com_drop_table 0
    Com_drop_user 0
    Com_execute_sql 0
    Com_flush 1
    Com_grant 0
    Com_ha_close 0
    Com_ha_open 0
    Com_ha_read 0
    Com_help 0
    Com_insert 5072
    Com_insert_select 0
    Com_kill 0
    Com_load 0
    Com_load_master_data 0
    Com_load_master_table 0
    Com_lock_tables 110
    Com_optimize 0
    Com_preload_keys 0
    Com_prepare_sql 0
    Com_purge 0
    Com_purge_before_date 0
    Com_rename_table 0
    Com_repair 0
    Com_replace 718
    Com_replace_select 0
    Com_reset 0
    Com_restore_table 0
    Com_revoke 0
    Com_revoke_all 0
    Com_rollback 0
    Com_savepoint 0
    Com_select 290989
    Com_set_option 162
    Com_show_binlog_events 0
    Com_show_binlogs 0
    Com_show_charsets 0
    Com_show_collations 0
    Com_show_column_types 0
    Com_show_create_db 0
    Com_show_create_table 0
    Com_show_databases 1
    Com_show_errors 0
    Com_show_fields 0
    Com_show_grants 0
    Com_show_innodb_status 0
    Com_show_keys 0
    Com_show_logs 0
    Com_show_master_status 0
    Com_show_ndb_status 0
    Com_show_new_master 0
    Com_show_open_tables 0
    Com_show_privileges 0
    Com_show_processlist 210
    Com_show_slave_hosts 0
    Com_show_slave_status 0
    Com_show_status 4
    Com_show_storage_engines 0
    Com_show_tables 1
    Com_show_variables 12
    Com_show_warnings 0
    Com_slave_start 0
    Com_slave_stop 0
    Com_stmt_close 0
    Com_stmt_execute 0
    Com_stmt_prepare 0
    Com_stmt_reset 0
    Com_stmt_send_long_data 0
    Com_truncate 0
    Com_unlock_tables 110
    Com_update 82071
    Com_update_multi 445
    Connections 174162
    Created_tmp_disk_tables 428
    Created_tmp_files 1774
    Created_tmp_tables 5056
    Delayed_errors 0
    Delayed_insert_threads 0
    Delayed_writes 0
    Flush_commands 1
    Handler_commit 0
    Handler_delete 4081
    Handler_discover 0
    Handler_read_first 72871
    Handler_read_key 1725510
    Handler_read_next 28339180
    Handler_read_prev 278260
    Handler_read_rnd 435995
    Handler_read_rnd_next 58331917
    Handler_rollback 0
    Handler_update 83643
    Handler_write 306794
    Key_blocks_not_flushed 0
    Key_blocks_unused 6003
    Key_blocks_used 1266
    Key_read_requests 4754904
    Key_reads 4752
    Key_write_requests 88525
    Key_writes 49065
    Max_used_connections 19
    Not_flushed_delayed_rows 0
    Open_files 116
    Open_streams 0
    Open_tables 64
    Opened_tables 1899
    Qcache_free_blocks 2
    Qcache_free_memory 33542184
    Qcache_hits 9998
    Qcache_inserts 4297
    Qcache_lowmem_prunes 0
    Qcache_not_cached 286644
    Qcache_queries_in_cache 2
    Qcache_total_blocks 8
    Questions 740025
    Rpl_status NULL
    Select_full_join 3
    Select_full_range_join 0
    Select_range 64713
    Select_range_check 0
    Select_scan 59596
    Slave_open_temp_tables 0
    Slave_retried_transactions 0
    Slave_running OFF
    Slow_launch_threads 0
    Slow_queries 1
    Sort_merge_passes 885
    Sort_range 39360
    Sort_rows 2079487
    Sort_scan 1867
    Table_locks_immediate 434468
    Table_locks_waited 91
    Threads_cached 0
    Threads_connected 1
    Threads_created 174161
    Threads_running 1
    Uptime 62489
    +----------------------------+-----------+
    Uptime: 62489 Threads: 1 Questions: 740026 Slow queries: 1 Opens: 1899 Flush tables: 1 Open tables: 64 Queries per second avg: 11.843
    mysqladmin Ver 8.41 Distrib 4.1.21, for pc-linux-gnu on i686
    (C) 2000 MySQL AB & MySQL Finland AB & TCX DataKonsult AB
    This software comes with ABSOLUTELY NO WARRANTY. This is free software,
    and you are welcome to modify and redistribute it under the GPL license

    Server version 4.1.21-standard-log
    Protocol version 10
    Connection Localhost via UNIX socket
    UNIX socket /var/lib/mysql/mysql.sock
    Uptime: 17 hours 21 min 29 sec

    Threads: 1 Questions: 740026 Slow queries: 1 Opens: 1899 Flush tables: 1 Open tables: 64 Queries per second avg: 11.843
    MySQL Report


    MySQL 4.1.21-standard-l uptime 0 16:33:21 Sun Feb 11 16:47:29 2007

    __ Key __________________________________________________ _______________
    Buffer used 1.23M of 8.00M %Used: 15.41
    Current 2.15M %Usage: 26.93
    Write ratio 0.554
    Read ratio 0.001

    __ Questions __________________________________________________ _________
    Total 695.93k 11.7/s
    DMS 358.13k 6.0/s %Total: 51.46
    Com_ 164.40k 2.8/s 23.62
    COM_QUIT 164.15k 2.8/s 23.59
    QC Hits 9.21k 0.2/s 1.32
    +Unknown 36 0.0/s 0.01
    Slow 1 0.0/s 0.00 %DMS: 0.00
    DMS 358.13k 6.0/s 51.46
    SELECT 273.03k 4.6/s 39.23 76.24
    UPDATE 77.66k 1.3/s 11.16 21.68
    INSERT 4.79k 0.1/s 0.69 1.34
    DELETE 1.98k 0.0/s 0.28 0.55
    REPLACE 677 0.0/s 0.10 0.19
    Com_ 164.40k 2.8/s 23.62
    change_db 163.81k 2.7/s 23.54
    show_proces 200 0.0/s 0.03
    set_option 159 0.0/s 0.02

    __ SELECT and Sort __________________________________________________ ___
    Scan 55.91k 0.9/s %SELECT: 20.48
    Range 60.31k 1.0/s 22.09
    Full join 3 0.0/s 0.00
    Range check 0 0/s 0.00
    Full rng join 0 0/s 0.00
    Sort scan 1.77k 0.0/s
    Sort range 36.51k 0.6/s
    Sort mrg pass 660 0.0/s

    __ Query Cache __________________________________________________ _______
    Memory usage 10.45k of 32.00M %Used: 0.03
    Block Fragmnt 25.00%
    Hits 9.21k 0.2/s
    Inserts 4.00k 0.1/s
    Insrt:Prune 4.00k:1 0.1/s
    Hit:Insert 2.30:1

    __ Table Locks __________________________________________________ _______
    Waited 80 0.0/s %Total: 0.02
    Immediate 408.00k 6.8/s

    __ Tables __________________________________________________ ____________
    Open 64 of 64 %Cache: 100.00
    Opened 1.78k 0.0/s

    __ Connections __________________________________________________ _______
    Max used 19 of 500 %Max: 3.80
    Total 164.15k 2.8/s

    __ Created Temp __________________________________________________ ______
    Disk table 407 0.0/s
    Table 4.72k 0.1/s
    File 1.32k 0.0/s

    __ Threads __________________________________________________ ___________
    Running 1 of 6
    Cached 0 of 0 %Hit: 0
    Created 164.15k 2.8/s
    Slow 0 0/s

    __ Aborted __________________________________________________ ___________
    Clients 0 0/s
    Connects 4 0.0/s

    __ Bytes __________________________________________________ _____________
    Sent 4.17G 70.0k/s
    Received 92.51M 1.6k/s
    Other scripts running on server?

    I use vb database api for my frontend, but there are no other 3rd party scripts or hacks are installed.

    Concurrent Users

    Average 70-80 users over 15 mins.

    PHPinfo

    http://markw.fireflyinternet.co.uk/phpinfo.htm

    ulimit

    core file size (blocks, -c) unlimited
    data seg size (kbytes, -d) unlimited
    file size (blocks, -f) unlimited
    pending signals (-i) 1024
    max locked memory (kbytes, -l) 32
    max memory size (kbytes, -m) unlimited
    open files (-n) 1024
    pipe size (512 bytes, -p) 8
    POSIX message queues (bytes, -q) 819200
    stack size (kbytes, -s) unlimited
    cpu time (seconds, -t) unlimited
    max user processes (-u) 16367
    virtual memory (kbytes, -v) unlimited
    file locks (-x) unlimited

    cpuinfo

    processor : 0
    vendor_id : GenuineIntel
    cpu family : 15
    model : 2
    model name : Intel(R) Pentium(R) 4 CPU 2.80GHz
    stepping : 9
    cpu MHz : 2814.795
    cache size : 512 KB
    fdiv_bug : no
    hlt_bug : no
    f00f_bug : no
    coma_bug : no
    fpu : yes
    fpu_exception : yes
    cpuid level : 2
    wp : yes
    flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe cid xtpr
    bogomips : 5630.33


  • need more info all info asked at http://www.vbulletin.com/forum/showthread.php?t=70117


  • Sorry eva - I've now updated my previous post with the requested. Thanks for your help.





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